that pic is [admittedly] borrowed from another setup. R's have a big-a$$ hump in the middle of the spare well.
the fuel odor would be less concerning than the firewall necessary for a NHRA inspection. the fuel system has to be sealed for it to work right, so either it'll leak or it won't.
my build is eerily similar. different ex-mani & 3.2L being primary differences.
i think any injector larger than a 720-ish is gonna be overkill and possibly affect power negatively. your motor will handle more power than 500 whp, it's your head's ability to breathe that will hold you back. cams will allow more power. you should hold off on injectors until you sort cams and decide on a tune. (i purchased my injectors/tune together.)
The head is fully built with over sized valves and 263 cams so there isn't really anything to sort. I only planned to run the ID1000's because there have been quite a few people having very good success with them. I agree they may be overkill but I haven't put much research into them. When I talked with Bill Schimmel he suggested to run Bosch 950s so I figured since the ID1000's were tested to supposedly out perform the bosch 950s that they would be a good move. As far as a tune I don't plan on buying an off the shelf tune so I shouldn't have to match injectors to a tune.
as for surge-tanks....
the IE one mounts very cleanly where the factory filter ass'y is. my caR rides lower than reason allows, and i'm considering it...primarily b/c of the noise. two 044's will make more noise than an open dump [inside the car]. and you def wanna run one (if not two) 044's. the A1000 is not well-suited to your application. the 044's will handle waaaay more power more smoothly AND more reliably. if you're die-hard about setting your surge tank and pump(s) in the trunk, check out Foffa's setup. it's very clean. you may also consider (as i am) a falsie to hide them in....like the air-riders do to hide pumps or tanks...something you can hide the equipment in, insulate for sound, but also open for access to your bits w/o having all your junk out and open in your trunk.
Everything would definitely be mounted in the well and concealed under a false floor with sound deadening all around. I would be clean like everything else I wouldn't throw it all in there. I am not set on having it in the trunk it just seemed like the best bet since I really am afraid of ripping the tank out from under the car. I would love to run IE's setup since it would be so easy but I have yet to see a picture one installed. All I continue to read is how great they are but not a single installed picture. If they fit right where the factory filter is I will most likely be purchasing one.
I would also most likely run the dual setup.
i have to assume you'll be running twin, open dumps. (if no, WTH are you doing all this work to make power?)
I did some research about this and pretty much concluded there was not much power to be had with running open dumps or recirculated gates other than an extreme increase in noise?
i look forward to this build coming to fruition as mine does. (i have a self-imposed March deadline for driving my R again)
I am 100% with you on the march deadline
hit me up anytime, and good luck.