intake manifold doesn't have much to do with your airbox placement,
it has more to do with your intercooler placement and pipe routing.
If you want your airbox on the driver's side. You need to consider the pipework from the airbox to the turbo.
On the mk4 TDI, the airbox is on the driver's side, but the turbo intake is on the passenger side. An upgrade on the mk4 is the "old man intake". Kerma has one available.
http://www.kermatdi.com/servlet/the-...Intake,/Detail
On the mk3 TDI, the airbox is on the passenger side.
Looking at stock intakes: the mk3 points to the driver's side, but the EGR is integral.
The mk4 points to the passenger side, the egr can be unbolted and removed.
European intakes offer different options, I believe. Take a look at TDIclub.
-Dave