A few options. Plug the dront PCV port, so it routes out the rear port, run that to the ground or to a can and let it vent. You can also have it run to the intake itself so it gets a bit of vacuum, but then you get hot, dirty oil in your intake...
Or, get a PCV plate on the front that is setup for VTA and just let it do it's thing... I have the EJ plate from back in the day and I just let it all vent to the air.
As for your previous setup... connecting the rear port to the manifold was not a good idea. When under boost, the boost was most certainly making its way into your head via the PCV port. This is why the front PCV section has a diaphragm... to stop said boost from pressurizing the head.








