Yes I had pretty much all of those. My dealer took care of it. Please take the car to the dealer. The one that you can check for is the little plastic trim that covers the wires right above the rear view mirror. The way it vibrates it makes it feel like rattle is coming from multiple locations. You can tap it with your finger and it will rattle on you.
There was also an issue with the headliner in my car right above and behind the driver's seat. Again tap with your fingers and you will hear it.
I also had an issue with rear deck rattling.