It is very possible that changing the CO pot amplified the affect. What Chip are you running?
It is possible that w/o the CO Pot, Digi stays in OL where you would not see any Lag. Was just the CO Pot thermistor giving you a 0 reading on the old one? What about the IAT terminals on the CO POT? Just curious.
Anyway, 450 ohm (COLD) (outer terminals) is usually a pretty good spot, but you may want to lower it and see if it has any effect. ..and possibly raise it to see if Digi is over compensating in Closed Loop just before it ticks over to OL.
Here is a fairly good thread in case you have not come across it:
http://forums.vwvortex.com/showthread.php?1860918