As I understand it yellow tops are a deep cycle battery which is recommended for cars with heavier electrical demands, such as a power roof. The VR6 has limited space under the hood so they mounted the battery in the trunk.
That said, I believe that the non-VR6 EOS uses a standard battery, so I don't believe that you'll have any problem with the red tops. I would limit the opening & closing of the roof without the car running.









