Well, that didn't take too long. It was a bad coil pack on cylinder #1. They did the ECM/TCM update. Troubleshot the ipod interface down to a bad interface and ordered a new one for me.
I told them I was hearing a clunking sound when turning into and leaving parking spaces. They checked the sub frame bolts, said they were good. He told me he was pretty sure it was my H&R springs in the front making the noise.
Going to stop at USP Motorsports on the way down to the Marathon Key next week, get re-flashed, purchase a coil pack to have on hand and have them check the springs. They're only charging me $49 for the re-flash and $22 for a coil pack. I feel it's a worth while investment to have one in the trunk.